FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007923503

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923503
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510442
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC39030.7646314370682663No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT37710.7387714960759499No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA24830.4864411627569832No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA24090.47194392310977545No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT23630.46293212549124096No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA23120.45294078465330045No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA22450.4398149055132611No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA19800.38789911488474693No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT19350.3790832259100936No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT15910.31169065241496585No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT15890.3112988351272035No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG15390.3015034029331442No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG15100.29582205226058983No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA14660.28720207192981767No Hit
TTCGCGGGCACGCTGCAGGATCGCGTGCTGTTGGTCCATCGCAC14600.28602662006653057No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC14330.2807370866817386No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT13810.27054983719991693No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC13130.25722804941599636No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC12530.24547353078312523No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG12310.24116354061773912No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG10460.20492044149971989No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA10250.20080635997821497No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT10010.19610455252506653No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC9280.18180322152174No Hit
GGTGGAAGCCTGATCCAGGCCTTTAATCTGTTTGCGCATCTTTT8690.17024461153275003No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG8630.16906915966946293No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC8450.16554280407960162No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG8240.1614287225580967No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT8000.15672691510494827No Hit
AGTAGAGGCACGGTCCAGACCCTTGATTTGTTTGCGCATTTTTT7740.15163329036403744No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG7520.14732330019865136No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA7490.1467355742670078No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7410.14516830511595832No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6760.13243424326368128No Hit
CGGGCCTTCGCCCGGGTCATCAGCCGGGCCCTGTTCGATCGCAC6650.13027924818098824No Hit
GCTAGAGGCCTGAGACAGGCCGCGGATCTGCTTACGCATTTTTT6640.13008333953710705No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG6580.12890788767381994No Hit
GTTGTCAGACGCTTTGTTCAGGCCACGAATCTGGGAGCGCATTT6500.12734061852277045No Hit
ACGGGACGCCTGGCTCAGGCCGCGAATCTGTGCGTTAATTTTGC6470.1267528925911269No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6440.12616516665948335No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6120.11989609005528543No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5980.11715336904094882No Hit
TGCACCTACTTCACGGCAGACGCGGCTTTCGGAACGGCCCGCAC5980.11715336904094882No Hit
TGTGACATTTAAATTGGAGTATCAGGTAGACGGGCCTTCGCCCG5960.11676155175318645No Hit
CGGCAGCAGCAGCTTCTGGCCGATATAAATCAGGTTGCCGTCGG5670.11108020108063209No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5650.1106883837928697No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5570.10912111464182024No Hit
GCCCTGACCGCGTGGGCCGGTGGACGGACCCTCACCCGGGTCGT5550.10872929735405786No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG5420.10618248498360246No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)