FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007923507

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923507
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences516246
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC39630.7676572796689951No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT38280.7415069559860997No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA25680.49743726827907625No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT24790.4801974252585008No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA24620.4769044215354695No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA23770.46043940292031316No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA23290.45114151005528375No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT20820.403296103020653No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA20460.39632268337188087No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT15910.3081864072554557No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT15880.3076052889513914No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC15130.29307733134978287No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG15120.29288362524842804No Hit
TTCGCGGGCACGCTGCAGGATCGCGTGCTGTTGGTCCATCGCAC15000.2905591520321707No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG14950.28959062152539683No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA14340.2777745493427552No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC13500.2615032368289536No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT13390.25937246971405103No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC13070.2531738744706981No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT10680.20687811624690555No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG10590.2051347613347125No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG10460.2026165820171004No Hit
GGTGGAAGCCTGATCCAGGCCTTTAATCTGTTTGCGCATCTTTT9230.17879073155046238No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC9080.17588514003014066No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG8600.16658724716511122No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC8480.16426277394885383No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA8440.1634879495434347No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG8240.15961382751633912No Hit
AGTAGAGGCACGGTCCAGACCCTTGATTTGTTTGCGCATTTTTT8040.1557397054892435No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT7990.15477117498246962No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG7810.15128446515808355No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7270.14082433568492542No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA7060.136756507556475No Hit
GCTAGAGGCCTGAGACAGGCCGCGGATCTGCTTACGCATTTTTT6930.13423832823886286No Hit
CGGGCCTTCGCCCGGGTCATCAGCCGGGCCCTGTTCGATCGCAC6690.12958938180634813No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6550.1268774963873812No Hit
ACGGGACGCCTGGCTCAGGCCGCGAATCTGTGCGTTAATTTTGC6510.1261026719819621No Hit
GTTGTCAGACGCTTTGTTCAGGCCACGAATCTGGGAGCGCATTT6470.12532784757654297No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6260.12126001944809259No Hit
TGTGACATTTAAATTGGAGTATCAGGTAGACGGGCCTTCGCCCG6080.11777330962370652No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5970.11564254250880394No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5940.1150614242047396No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5890.11409289369796569No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5790.11215583268441791No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG5600.10847541675867707No Hit
TGCACCTACTTCACGGCAGACGCGGCTTTCGGAACGGCCCGCAC5550.10750688625190316No Hit
CGGCAGCAGCAGCTTCTGGCCGATATAAATCAGGTTGCCGTCGG5490.10634464964377449No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG5470.10595723744106492No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA5330.103245352022098No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA5240.10150199710990497No Hit
GCCCTGACCGCGTGGGCCGGTGGACGGACCCTCACCCGGGTCGT5190.10053346660313107No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT5170.1001460544004215No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)