FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007923509

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923509
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences492438
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC36670.7446622722048258No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT34130.6930821748118545No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT24060.488589426486177No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA23630.47985736275429597No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA23440.4759990090123021No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA21880.44431989407803624No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA21870.4441168228284576No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA19180.3894906566918069No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT18620.37811866671540373No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG15470.3141512230981362No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT15460.3139481518485576No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT14360.2916103143949086No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC14280.28998574439827957No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA14120.2867366044050215No Hit
TTCGCGGGCACGCTGCAGGATCGCGTGCTGTTGGTCCATCGCAC14080.28592431940670704No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG13840.28105060941682No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT12460.25302677697496945No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC12250.24876228073381826No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC12050.24470085574224573No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG11620.23596879201036475No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT10150.20611731832230656No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG9890.20083746583326226No Hit
GGTGGAAGCCTGATCCAGGCCTTTAATCTGTTTGCGCATCTTTT8870.1801241983762423No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC8790.17849962837961328No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA8720.1770781296325629No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG8310.16875220839983918No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC8080.16408156965953075No Hit
AGTAGAGGCACGGTCCAGACCCTTGATTTGTTTGCGCATTTTTT8060.1636754271603735No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA7580.1539280071805994No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG7550.15331879343186353No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG7380.14986658218902685No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT7290.1480389409428192No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6990.14194680345546037No Hit
GTTGTCAGACGCTTTGTTCAGGCCACGAATCTGGGAGCGCATTT6720.13646387971683746No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG6630.1346362384706298No Hit
CGGGCCTTCGCCCGGGTCATCAGCCGGGCCCTGTTCGATCGCAC6450.13098095597821452No Hit
GCTAGAGGCCTGAGACAGGCCGCGGATCTGCTTACGCATTTTTT6280.12752874473537784No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6200.12590417473874882No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6040.1226550347454908No Hit
TGTGACATTTAAATTGGAGTATCAGGTAGACGGGCCTTCGCCCG5950.12082739349928316No Hit
ACGGGACGCCTGGCTCAGGCCGCGAATCTGTGCGTTAATTTTGC5920.12021817975054727No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5870.11920282350265414No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5850.1187966810034969No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5820.11818746725476101No Hit
TGCACCTACTTCACGGCAGACGCGGCTTTCGGAACGGCCCGCAC5590.11351682851445258No Hit
CGGCAGCAGCAGCTTCTGGCCGATATAAATCAGGTTGCCGTCGG5230.10620626352962201No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA5230.10620626352962201No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5100.10356633728509985No Hit
GCCCTGACCGCGTGGGCCGGTGGACGGACCCTCACCCGGGTCGT5100.10356633728509985No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG5070.10295712353636398No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)