FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007923512

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923512
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504902
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT36500.7229125652106746No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA18540.36719997147961386No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG9770.19350289759200795No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT9650.19112619874747971No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9510.18835338342886343No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG9110.1804310539471026No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG8590.17013202562081356No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA8530.16894367619854941No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA8490.16815144325037334No Hit
AACGTAACCACCAACCAGGACGGCACCGTCT8000.15844658963521635No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG7800.15448542489433592No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG7710.15270290076093976No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG6870.13606600884924203No Hit
AGCCTGGGTTCCCTGAGCTCTAACCCAAGCT6020.1192310587005003No Hit
AAATCTGACGCAGTAAAAGCCCTGAAGGAAC5780.1144776610114438No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5460.10813979742603515No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA5440.10774368095194711No Hit
CTGATCCTGGGCCTGGTTCTGGAACAGGTGC5390.106753389766727No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)