FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007923513

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923513
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461168
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT33840.7337889879610033No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA21840.4735801269819241No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA21190.45948548034555736No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT20010.4338982756826146No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT10920.23679006349096204No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG9150.19840925649654792No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT8690.18843458349234984No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7710.1671841931790584No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG6510.14116330708115046No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA6490.14072962564618535No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6290.13639281129653402No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6150.13335704125177808No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5970.12945390833709192No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT5720.12403289040002775No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5660.12273184609513235No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT5460.11839503174548102No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT5040.10928772161121326No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)