FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007923514

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923514
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461168
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT52061.1288727752142387No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT34020.7376921208756895No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA21030.45601602886583636No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG11790.25565520591194535No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT9150.19840925649654792No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8800.1908198313846581No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA8500.1843146098601811No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8410.18236304340283802No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7650.165883148874163No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6940.1504874579329008No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6730.14593380286576693No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA6490.14072962564618535No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG6470.1402959442112202No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5860.12706866044478368No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC5690.12338236824758005No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5640.12229816466016723No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)