FastQCFastQC Report
Wed 31 May 2023
EGAF00007923515

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923515
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences434861
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT30500.7013735423503142No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA20900.4806133454138219No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA19440.447039398796397No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT18340.4217439595640906No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT10240.23547754339892515No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG8630.19845421870436758No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT8250.18971579424229812No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7390.169939359933404No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA6440.1480932987782303No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG6120.14073462554701388No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6050.13912491577768527No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6000.1379751230853077No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT5760.13245611816189543No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5390.12394765223830144No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5270.12118814977659527No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT5100.11727885462251156No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT4470.10279146669855425No Hit
GGTACCGCTGTTCAGGGTGTACTGCTGGAACAGCTGCTTCCACG4470.10279146669855425No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)