FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007923516

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923516
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences434861
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT47271.0870140113737494No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40770.9375409613646659No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT30250.6956245788884264No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA18740.43094230110311116No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG11100.2552539777078193No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT8650.19891413578131864No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA7990.1837368722419348No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7960.18304699662650825No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7300.16786973308712438No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7170.16488027208694273No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6370.14648358900890168No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA6300.1448738792395731No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA6030.13866499870073426No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG5870.13498566208512605No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5370.1234877351613504No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC4970.11428939362232989No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)