FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007923517

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923517
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464784
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT33830.7278649867465318No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA23200.4991565974732349No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA21270.4576319322524012No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT20010.430522565320665No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT10700.23021446521394887No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG9530.2050414816344797No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT9230.1985868704602568No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7930.17061688870529107No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG7060.15189851630004475No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA6560.1411408310096733No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6130.13188922165995387No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT6120.13167406795414643No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5760.123928534545079No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5740.12349822713346416No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT5630.12113153636958242No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5520.11876484560570072No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)