FastQCFastQC Report
Wed 31 May 2023
EGAF00007923518

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923518
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464784
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT49671.068668456745499No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT34800.7487348962098522No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA20670.4447227099039554No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG11300.24312368756239455No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT9750.20977486316224309No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA9140.19665048710798996No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9050.1947141037557231No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8670.1865382629350408No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8130.17491996282143965No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7670.16502289235429793No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG6940.14931667183035563No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA6600.14200144583290303No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6500.13984990877482875No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC6190.13318014389479843No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5790.1245739956625013No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5470.11768907707666357No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)