FastQCFastQC Report
Wed 31 May 2023
EGAF00007923519

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923519
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences440215
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT32800.7450904671580932No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA21090.4790840839135423No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT19210.4363776790886271No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA18890.4291085037992799No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT10680.2426087252819645No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG8910.20240109946276252No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT8210.18649977851731542No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7830.17786763286121554No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG6910.1569687539043422No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5980.13584271321967675No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA5930.13470690458071624No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5590.1269834058357848No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5390.12244017127994275No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT5270.11971423054643754No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT5240.11903274536306124No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5120.11630680462955602No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT4580.10404007132878253No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)