FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007923520

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923520
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences440215
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT46181.049032858943925No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39350.8938813988619198No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT32930.7480435696193906No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA19570.4445555012891428No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG11170.2537396499437775No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT9010.20467271674068352No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8300.18854423406744433No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7910.17968492668355235No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA7810.17741330940563133No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6820.15492429835421329No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG6710.15242551934850015No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6190.14061310950331088No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA5890.13379825766954784No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5440.12357597991890326No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5280.11994139227422963No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC5140.1167611280851402No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)