FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007923521

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923521
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475262
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG34680.7297027744696609No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA34260.7208655436369834No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA31810.6693150304463643No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG31020.6526926200706137No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15180.31940277152391733No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT13980.29415354057341003No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT13910.2926806687679638No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC12730.2678522583332983No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA12410.2611191300798297No Hit
CAGGTCATCTTCGTCCGCATCGCCGTCTTTGTTCGGCACCTGGG11370.23923646325605666No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC8260.17379887304265856No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8040.1691698473683989No Hit
CTTTGGGTGTTTCTGTTTCTGACGCGCTTCGCTAGAGGTACGTT7890.16601369349958547No Hit
TTTAGTGCCGTTGACTGCAATTTCAACACGGCGGTCCGGCGCCA7870.1655928729837437No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7690.16180548834116762No Hit
CTGGTCCATGGTCTCTTTCGGCATTGCGCCGTAAGTGGTCAGGT7390.15549318060354078No Hit
GGAGCTCGGACCTACGTTGGTAACAGTGAACACGTCCGGACGCG7150.15044333441343932No Hit
GTCAATGCACGCGCCAGAGTTGAAGGTCTGAGTAGCAGAGCTGC6790.14286856512828713No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG6770.14244774461244536No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT6730.14160610358076176No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6570.13823953945402745No Hit
GTCGATGCAAGCACCGGAGTTGAAGGTCTGGGTGGCGCTAGAAC6500.1367666676485812No Hit
CATGGTTGCGGCGGTAGATGCCGCGTTCACGTCAACGCGCAGTT6170.1298231291371917No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5900.12414205217332755No Hit
CGGTTTATCTTTCTCGACGTCTTCCGCCAGCGGGAATGCCGGGC5310.1117278469559948No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5250.11046538540846944No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG5240.11025497515054854No Hit
ACCCGGAGACTGCGGCAGCGTATCACGGGTGCCGTCGCCACCCT5120.10773005205549781No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4850.10204897509163366No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)