FastQCFastQC Report
Sun 21 May 2023
EGAF00007923522

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923522
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475262
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT77751.635939755334952No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC37280.7844094415290934No Hit
ATGTCCAACATGGACATCGATGGTATTAACA31380.6602673893557658No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA28480.5992484145587066No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21410.45048836220863436No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15140.3185611304922337No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT14210.2989929765055906No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC13660.2874204123199414No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC13430.28258097638776086No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12370.26027748904814607No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10670.22450774520159406No Hit
TTCGTGGCAAAAGGTGTAGCCGCGGACGCCA8220.17295723201097501No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGG8180.1721155909792914No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7940.16706574478918995No Hit
CACAAAGCAAAACACATCAAGGCCTGGTGCC7710.1622263088570094No Hit
ATGGTTGGTGGTGAAGCCGGCAAAGAAGCGG7530.1584389242144333No Hit
CAGTCCATTGTAAACCGTACTGACCTGGATC7340.1544411293139363No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG7240.15233702673472738No Hit
CCGCGTGTCCTGAGCAACTCCGGTTGGGGTC6590.13866035996986925No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6590.13866035996986925No Hit
CTGAACGTACGTCCGGGCAAAACTGTTTCCG6340.1334001035218469No Hit
CACACCCCTCCGATGCCGTCTATCGGTCTGG5890.12393164191540666No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA5630.1184609752094634No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5410.11383194953520374No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTA5270.11088620592431123No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA5030.10583635973420975No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4980.10478430844460529No Hit
CACACCGCATACGCGAACTCTATCGATGGCA4900.10310102638123814No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4760.10015528277034563No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)