FastQCFastQC Report
Wed 31 May 2023
EGAF00007923525

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923525
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484663
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG35790.7384512537577657No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA34900.7200879786573351No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA31960.6594272721458003No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG31620.6524120883995683No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15240.3144452949781601No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT14840.306192137629652No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT14130.29154278333605No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC13110.2704972320973542No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA11830.2440871285821282No Hit
CAGGTCATCTTCGTCCGCATCGCCGTCTTTGTTCGGCACCTGGG11740.2422301681787139No Hit
CTTTGGGTGTTTCTGTTTCTGACGCGCTTCGCTAGAGGTACGTT8690.1792998433963393No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC8520.17579225152322334No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG8140.16795175204214063No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7920.16341251550046115No Hit
TTTAGTGCCGTTGACTGCAATTTCAACACGGCGGTCCGGCGCCA7890.16279352869932304No Hit
GGAGCTCGGACCTACGTTGGTAACAGTGAACACGTCCGGACGCG7880.1625871997656103No Hit
CTGGTCCATGGTCTCTTTCGGCATTGCGCCGTAAGTGGTCAGGT7850.16196821296447222No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG7160.14773151653829567No Hit
CATGGTTGCGGCGGTAGATGCCGCGTTCACGTCAACGCGCAGTT7120.14690620080344488No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT6850.14133531959320186No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6820.14071633279206375No Hit
GTCAATGCACGCGCCAGAGTTGAAGGTCTGAGTAGCAGAGCTGC6790.14009734599092566No Hit
GTCGATGCAAGCACCGGAGTTGAAGGTCTGGGTGGCGCTAGAAC6110.12606697849846182No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6070.125241662763611No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5590.11533787394540124No Hit
ACCCGGAGACTGCGGCAGCGTATCACGGGTGCCGTCGCCACCCT5310.10956066380144554No Hit
CGGTTTATCTTTCTCGACGTCTTCCGCCAGCGGGAATGCCGGGC5260.10852901913288203No Hit
CAGCTGCATCAGTTCGGACACTGCAGCGCGCGCAGAGCCCGGCT5180.1068783876631804No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG5160.10646572979575498No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)