FastQCFastQC Report
Sun 21 May 2023
EGAF00007923527

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923527
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451993
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG33150.7334184378961621No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA32270.713949109831347No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA31070.687400026106599No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG28760.6362930399364591No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14450.31969521651883986No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT13300.29425234461595645No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT13050.28872128550663395No Hit
CAGGTCATCTTCGTCCGCATCGCCGTCTTTGTTCGGCACCTGGG11920.2637208983324963No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA11580.25619865794381774No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC11190.24757020573327465No Hit
CTTTGGGTGTTTCTGTTTCTGACGCGCTTCGCTAGAGGTACGTT8090.17898507277767575No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC8050.17810010332018417No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7840.17345401366835328No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7420.16416183436469148No Hit
CTGGTCCATGGTCTCTTTCGGCATTGCGCCGTAAGTGGTCAGGT7160.1584095328909961No Hit
TTTAGTGCCGTTGACTGCAATTTCAACACGGCGGTCCGGCGCCA6890.1524359890529278No Hit
GGAGCTCGGACCTACGTTGGTAACAGTGAACACGTCCGGACGCG6820.1508872925023175No Hit
GTCAATGCACGCGCCAGAGTTGAAGGTCTGAGTAGCAGAGCTGC6700.14823238412984271No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT6380.14115262846990995No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6300.13938268955492672No Hit
GTCGATGCAAGCACCGGAGTTGAAGGTCTGGGTGGCGCTAGAAC6170.13650653881807903No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG6080.13451535753872293No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5950.13163920680187524No Hit
CATGGTTGCGGCGGTAGATGCCGCGTTCACGTCAACGCGCAGTT5910.13075423734438366No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5480.12124081567634896No Hit
CGGTTTATCTTTCTCGACGTCTTCCGCCAGCGGGAATGCCGGGC5070.1121698787370601No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG4860.10752378908522921No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4860.10752378908522921No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA4720.1044263959840086No Hit
ACCCGGAGACTGCGGCAGCGTATCACGGGTGCCGTCGCCACCCT4660.10309894179777121No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)