FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007923531

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923531
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences435086
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA17300.39762253899229116No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA15350.35280381349894047No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8480.19490399599159705No Hit
ACCCGGGTCACCCTTATCGCCTTTGTCGCCTTTCGCGCCTACCA5400.12411339367389435No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG5140.11813756360811425No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)