FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007923532

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923532
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences435086
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG69961.6079579669306758No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT38660.8885599628579177No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8740.20087982605737717No Hit
GTGAGCGATGCCGTCGCTAACGGCCTGAAGG5320.1222746767305774No Hit
ATGTCCAACATGGACATCGATGGTATTAACA4850.11147221468859031No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)