FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007923539

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923539
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences556937
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8440.1515431727466482No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5970.10719345276036607No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5820.10450014992719106No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)