FastQCFastQC Report
Wed 31 May 2023
EGAF00007923546

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923546
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences572957
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG53010.9252003204428952No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13630.23788870718046903No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11940.20839260188809983No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11900.20769446921845794No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8080.14102279926765882No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7240.12636201320517945No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7030.1226968166895596No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6780.11833348750429787No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6520.1137956251516257No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6370.11117762764046865No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)