FastQCFastQC Report
Wed 31 May 2023
EGAF00007923550

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923550
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences547355
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35190.642909994427748No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16280.2974303696869491No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG11310.2066300664102822No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG11190.2044377049629582No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11150.20370691781385025No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9800.1790428515314558No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9370.171186889678545No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9270.16935992180577505No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8980.16406171497474217No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8900.1626001406765262No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8810.16095586959103325No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7590.13866686154323976No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7220.13190708041399093No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6810.1244165121356341No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6320.1154643695590613No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6320.1154643695590613No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6150.11235852417535237No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG6060.11071425308985941No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5710.10431986553516458No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5670.10358907838605659No Hit

[OK]Adapter Content

Adapter graph