FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007923552

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923552
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472205
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45380.9610232843786067No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19900.4214271344013723No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12680.2685274404125327No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11870.25137387363539143No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11740.2486208320538749No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11390.24120879702671508No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10240.2168549676517614No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9250.19588949714636653No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8190.17344161963553964No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6720.14231107252146843No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6620.1401933482279942No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6130.12981649918997046No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5990.12685168517910653No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG5680.12028673986933641No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5640.11943965015194671No Hit
GGTCAGGTGAAACCGGAAGTTAAACCAACCC5290.1120276151247869No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5050.10694507682044874No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4910.10398026280958482No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)