FastQCFastQC Report
Wed 31 May 2023
EGAF00007923554

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923554
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences493923
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC23500.47578266247977924No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12630.25570787349445157No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12400.2510512772233729No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12000.24295284892584473No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11500.23282981355393453No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10750.21764526049606925No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10440.21136897856548492No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10240.20731976441672084No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7990.16176610524312496No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7870.1593365767538665No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7220.14617663077038323No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA6580.1332191454943382No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6500.13159945983483257No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6220.12593056002656286No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG6030.12208380658523697No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5540.11216323192076497No Hit
GGTCAGGTGAAACCGGAAGTTAAACCAACCC5480.11094846767613574No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5420.10973370343150653No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)