FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007923556

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923556
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476800
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45380.951761744966443No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20940.43917785234899326No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12900.27055369127516776No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12010.25188758389261745No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11920.25No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11750.24643456375838926No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10100.2118288590604027No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9780.20511744966442955No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7890.1654781879194631No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7170.15037751677852348No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7120.1493288590604027No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA6120.12835570469798657No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5980.12541946308724833No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG5970.12520973154362416No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5930.12437080536912752No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5690.11933724832214765No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5310.11136744966442955No Hit
GGTCAGGTGAAACCGGAAGTTAAACCAACCC5300.11115771812080537No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)