FastQCFastQC Report
Sun 21 May 2023
EGAF00007923558

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923558
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences492665
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25370.5149543807658348No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA21550.43741690601118405No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19330.39235586047314097No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG17490.3550079668740422No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14010.2843717333279206No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10030.20358661565160913No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8900.18065013751737996No Hit
GCGGACGAAGAGGAAGAGGAACTGCTGGCGC8780.1782144053261344No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT8600.17456080703926602No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8320.1688774319263597No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7440.1510153958572255No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA6710.13619802502714826No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG6230.12645509626216597No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA5060.10270670739752163No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5010.10169181898450265No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)