FastQCFastQC Report
Sun 21 May 2023
EGAF00007923561

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923561
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences501237
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19270.3844488734869932No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG16020.31960928662489No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13600.2713287327152624No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11390.22723781364903228No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11370.226838800806804No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9810.19571579911299444No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9310.18574047805728627No Hit
CGGGCTCGGTGGGTGACGATGGTGGGTGGAAACGCCACGACGAC9170.18294738816168798No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG9060.1807528175294322No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG8500.16958045794703902No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT5860.11691076277289986No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG5710.11391816645618741No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5490.10952902519167579No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG5350.10673593529607751No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)