FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007923562

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923562
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences501237
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27940.557420940592973No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA22490.4486899410857538No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19070.3804587450647099No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG16900.3371658516829364No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14250.28429665008768307No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10280.20509260090536013No Hit
GCGGACGAAGAGGAAGAGGAACTGCTGGCGC8930.17815923405494805No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT8910.17776022121271973No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8650.17257305426375147No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8400.16758539373589737No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7370.14703623236113855No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA6670.13307078288314708No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5780.11531471140398654No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA5660.11292063435061658No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)