FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007923564

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923564
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477567
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39320.8233399711454099No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27530.5764636166234267No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA21180.44349798038809213No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18550.38842717356936307No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG16620.34801399594193067No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9560.2001813358125666No Hit
GCGGACGAAGAGGAAGAGGAACTGCTGGCGC8230.17233184034910284No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8050.16856273569991226No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7850.16437484164525606No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT7830.16395605223979043No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6860.14364476607470783No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA6430.134640793857197No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5820.12186771699049558No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)