FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007923566

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923566
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482227
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13630.2826469691659737No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10060.2086154445935213No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9130.18932992138557153No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6930.14370825358181935No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6700.13893871558415433No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5930.1229711318528411No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5860.12151953333181262No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5740.11903107872433523No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5090.10555194960049935No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC4850.10057504038554457No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)