FastQCFastQC Report
Wed 31 May 2023
EGAF00007923568

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923568
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458879
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40540.8834572948424312No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9420.20528287413457577No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8480.18479817119545677No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6300.13729109416643603No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6270.13663732705135775No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5540.1207289939177866No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5430.11833184782916631No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5410.11789600308578078No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5110.11135833193499811No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4910.10699988450114299No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)