FastQCFastQC Report
Wed 31 May 2023
EGAF00007923570

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923570
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences492057
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13480.27395200149576165No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10570.21481251155862024No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9420.19144123546662278No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7180.14591805420916681No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6560.13331788796826383No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6290.12783071879883837No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5980.12153063567838684No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5680.11543378104569187No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5340.10852401246197088No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC5000.10161424387824988No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)