FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007923572

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923572
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469324
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39780.8476020829959687No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9720.20710639132028194No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8740.1862252942530107No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6810.14510231737562962No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6460.13764478270874703No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5950.12677808933700385No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5590.11910748225106749No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5530.11782904773674477No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5150.10973229581270083No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4830.10291397840297961No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT4780.10184861630771067No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC4720.10057018179338793No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)