FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007923583

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923583
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences444083
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT17850.4019518873724056No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG13390.30152021131184936No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAAC8670.19523377386659702No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT7620.17158954519763198No Hit
GACGTTCTCTTCTTCGTCGGAGTCCTTCAGGTGACGGTAAC7390.16641033320347773No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCG7030.15830374051697543No Hit
TTTAGCTTCACGACCACGAGAACGAGAGCGGGCGCGACGGG6080.1369113431498166No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG5400.12159889029753447No Hit
GGTGCTGTTGGCTTTGCCGCCGGTGGACGTCACGGTTGGTA5210.1173204108241027No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCG4840.10898863500741979No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGG4710.10606125431507174No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)