FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007923584

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923584
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences444083
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC18120.4080318318872823No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC13260.2985928306195013No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTATG8480.19095529439316525No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT7810.17586802467106374No Hit
CGCCTGGACGCAGAACAGCGCGCCCAGCAGAAC7360.16573478381293585No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAGAA7120.160330388688601No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG6660.1499719647002925No Hit
GAAATGGAGAACATCCTGCAGAACCTGACTCTG6190.1393883575818034No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC5850.13173213115566235No Hit
CAGGCAAGCGGTCCGGGTAACTCCTCCACCTCT5290.11912187586554765No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5130.11551894578265774No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAAAC4810.10831308561687791No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCGCG4780.10763753622633607No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)