FastQCFastQC Report
Sun 21 May 2023
EGAF00007923585

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923585
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences431551
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT16700.386976278585845No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG13540.31375202467379293No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAAC9570.2217582626387148No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT7760.17981652226503936No Hit
GACGTTCTCTTCTTCGTCGGAGTCCTTCAGGTGACGGTAAC7420.17193796329981856No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCG6710.1554856784018575No Hit
TTTAGCTTCACGACCACGAGAACGAGAGCGGGCGCGACGGG5910.13694789260133797No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG5510.1276789997010782No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCG4830.11192188177063661No Hit
GGTGCTGTTGGCTTTGCCGCCGGTGGACGTCACGGTTGGTA4630.10728743532050673No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA4480.10381160048290933No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)