FastQCFastQC Report
Wed 31 May 2023
EGAF00007923587

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923587
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences444474
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT18640.41937211175456834No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG13870.3120542483924819No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAAC9080.20428641495340558No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT8020.18043800087294196No Hit
GACGTTCTCTTCTTCGTCGGAGTCCTTCAGGTGACGGTAAC7830.1761632851415381No Hit
TTTAGCTTCACGACCACGAGAACGAGAGCGGGCGCGACGGG7140.16063931748538723No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCG6910.1554646616000036No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG5830.13116627744255005No Hit
GGTGCTGTTGGCTTTGCCGCCGGTGGACGTCACGGTTGGTA5340.12014201055629802No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)