FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007923588

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923588
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences444474
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC18700.420722021985538No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC13880.31227923343097685No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTATG8930.20091163937598153No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT8450.19011235752822436No Hit
CGCCTGGACGCAGAACAGCGCGCCCAGCAGAAC7900.17773818041100264No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG7180.16153925763936697No Hit
GAAATGGAGAACATCCTGCAGAACCTGACTCTG7070.15906442221592262No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAGAA7000.15748952694645807No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC6230.1401656789823477No Hit
CAGGCAAGCGGTCCGGGTAACTCCTCCACCTCT5410.12171690582576258No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG4570.10281816259218761No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAAAC4560.10259317755369268No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)