FastQCFastQC Report
Sun 21 May 2023
EGAF00007923591

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923591
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467549
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG23440.5013378276929263No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT23050.4929964559864314No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG20740.44358986972488446No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT17880.3824198105439216No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT15080.32253303931780414No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG14590.31205285435323354No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT12090.258582522901343No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC11790.2521660831271161No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC11490.2457496433528892No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT11480.24553576202708166No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT11440.2446802367238514No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCA10810.23120571319797498No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT8630.18457958417192635No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT8530.18244077091385075No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGT8200.17538268716220118No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGA8120.17367163655574067No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT7800.1668274341298987No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGT7480.15998323170405668No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGAC7310.15634724916532813No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGC7110.15206962264917687No Hit
ACGCGGATCTTGACGGTTCGGCGGGTAGCCGTCGGAAGAGT6920.14800587745883317No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCG6860.1467225895039878No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACG6420.13731181116845506No Hit
TGGACCGGTAACCGGACGGCCACGACGGCCGTTATCGAACA6240.13346194730391894No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTG5750.1229817623393484No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA5670.12127071173288789No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG5620.12020130510385008No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCT5480.1172069665425442No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGC5440.11635144123931396No Hit
CAGCACACCGTCGCCCTCGAAAGCACCGCCATCATCTTCGT5430.1161375599135064No Hit
TTTCAGGATAGACGGGCTTGCAACCGGCGGAGCGTTGGATA5230.11185993339735513No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTA4800.10266303638762997No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGA4760.10180751108439971No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)