FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007923592

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923592
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467549
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT27800.5945900857450236No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT25510.5456112621350917No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG24250.5186622150833389No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC23300.4983434891316204No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC17920.38327533584715184No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC16660.356326288795399No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC15090.3227469206436117No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA13690.29280353503055295No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT13690.29280353503055295No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC12260.2622185054400715No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC11990.2564437096432673No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAACAG10910.23334452645605058No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT10290.22008388425598172No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT9160.1959152944397272No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACCAC8780.1877878040590398No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC8630.18457958417192635No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCCGC8080.17281611125251042No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCATAC8080.17281611125251042No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTGAA8000.17110506064604994No Hit
CCGCAGCAGCAGCAGCGCCACGCGGCTTTCTCT7570.16190816363632476No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGTTC7200.15399455458144495No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAGCC7060.15100021602013908No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGGTG6930.14821975878464075No Hit
AACGACCTGTACCGCCGCGTGATCAATCGTAAC6560.14030614972976094No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTCGT6490.138808980449108No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCTTC6420.13731181116845506No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGAGC6230.1332480659781114No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGGAA5970.12768715150711477No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGGCT5670.12127071173288789No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGAGC5640.1206290677554652No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGTCC5370.11485427195866102No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5120.10950723881347196No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC5060.10822395085862659No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGAAA5040.10779618820701145No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTCGT5030.1075823068812039No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG4930.10544349362312827No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATCAC4900.10480184964570557No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATCAC4870.1041602056682829No Hit
GTGCCGGTCAGCGGCTCTGCTCCGGGTCGCCTG4830.10330468036505265No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACGTC4800.10266303638762997No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC4800.10266303638762997No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)