FastQCFastQC Report
Sun 21 May 2023
EGAF00007923593

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923593
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences452984
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT22560.49803083552619964No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG21700.47904561750525404No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG21090.4655793582113275No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT18110.3997933701852604No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG14510.320320364516186No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT13840.3055295551277749No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC12330.2721950444165798No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT11460.2529890680465535No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT11370.2510022429048267No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC11140.2459248008759691No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT10830.2390812920544655No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCA9380.20707133143775497No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT8380.18499549652967875No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT8120.17925577945357893No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGT7410.16358193666884482No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGT7270.16049131978171416No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGA7190.15872525298906806No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT7190.15872525298906806No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGC7100.15673842784734118No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGAC6990.1543100860074528No Hit
ACGCGGATCTTGACGGTTCGGCGGGTAGCCGTCGGAAGAGT6600.14570051039330306No Hit
TGGACCGGTAACCGGACGGCCACGACGGCCGTTATCGAACA6440.1421683768080109No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACG5890.13002666760856896No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCG5640.12450770888154991No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGC5600.12362467548522685No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG5540.12230012539074227No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTG5410.11943026685269237No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCT5200.11479434152199637No Hit
TTTCAGGATAGACGGGCTTGCAACCGGCGGAGCGTTGGATA4970.10971689949313883No Hit
CAGCACACCGTCGCCCTCGAAAGCACCGCCATCATCTTCGT4920.10861310774773503No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA4860.10728855765325045No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGA4680.10331490736979673No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTA4620.10199035727531215No Hit
GTCAGCGCTTTTCATGGAGGTGAACAGAGTTTCCAGCAGTT4560.10066580718082759No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)