FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007923594

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923594
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences452984
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT28060.6194479275206188No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT25020.5523373894000672No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG23400.5165745368489836No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21820.4816947176942232No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC21280.469773766843862No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC18390.40597460395952173No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC15720.3470321247549582No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC15250.33665648234816237No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA12650.27925931158716427No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT12550.2770517280963566No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC11680.2578457517263303No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC11060.24415873408332303No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAACAG9780.21590166540098546No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT9270.20464298959786661No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT8680.19161824700210162No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC8440.18632004662416332No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACCAC8320.1836709464351942No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCCGC7370.16269890327252176No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTGAA7240.15982904473447185No Hit
CCGCAGCAGCAGCAGCGCCACGCGGCTTTCTCT7080.15629691114917968No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCATAC6970.1538685693092913No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGTTC6860.1514402274694029No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGGTG6650.14680430213870688No Hit
AACGACCTGTACCGCCGCGTGATCAATCGTAAC6550.14459671864789927No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGAGC5980.13201349275029584No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCTTC5940.13113045935397277No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTCGT5840.12892287586316514No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGGAA5730.12649453402327676No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAGCC5590.1234039171361461No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGTCC5440.12009254189993465No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGAGC5330.11766420006004627No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGGCT5230.11545661656923865No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATCAC5070.11192448298394644No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG5010.11059993288946189No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC4940.10905462444589654No Hit
GTGCCGGTCAGCGGCTCTGCTCCGGGTCGCCTG4690.10353566571887748No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTCGT4610.10176959892623139No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACGTC4560.10066580718082759No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTTTC4550.1004450488317468No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)