FastQCFastQC Report
Wed 31 May 2023
EGAF00007923596

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923596
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469674
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT29390.6257531819943194No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT25120.5348390585810584No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG24470.5209996721129975No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC23030.4903401082452935No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC19320.4113491485583618No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC16630.3540753799443869No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC15730.334913152527072No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT13290.28296222486235134No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA12940.2755102475333955No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC12360.2631612565311259No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC11750.2501735246149457No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT10040.2137652925220472No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAACAG10020.2133394652461069No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT9250.19694511512240404No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC8760.18651234686186588No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACCAC8600.18310572865434324No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTGAA8120.17288587403177524No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCCGC7810.16628555125470007No Hit
CCGCAGCAGCAGCAGCGCCACGCGGCTTTCTCT7680.1635176739610879No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCATAC7450.15862066028777408No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGTTC7360.15670443754604257No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGGTG7260.1545753011663409No Hit
AACGACCTGTACCGCCGCGTGATCAATCGTAAC7170.1526590784246094No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCTTC6590.14031008742233975No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTCGT6350.13520016011105576No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAGCC6330.13477433283511542No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGAGC6200.13200645554150325No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGGCT6080.12945149188586125No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGGAA6080.12945149188586125No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGAGC5720.12178660091893526No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGTCC5590.1190187236253231No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5360.11412170995200926No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACGTC5350.1139087963140391No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGAAA5120.10901178264072528No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5100.10858595536478494No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC5010.10666973262305345No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTCGT4970.10581807807117276No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG4930.1049664235192921No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATCAC4900.1043276826053816No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATCAC4870.10368894169147111No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)