FastQCFastQC Report
Wed 31 May 2023
EGAF00007923597

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923597
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457482
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT22520.49225980475734565No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG22320.4878880480543497No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG22020.4813304129998557No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT18050.39455104244538586No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG14630.3197940028241548No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT13970.3053672057042682No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC11920.2605566994985595No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT11760.25705929413616274No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT11500.251376010422268No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC11010.24066520649992784No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT10770.23541909845633271No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCA10410.22754993639093998No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT8500.1857996598773285No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGT8070.1764003829658872No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7860.17181003842774142No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT7340.1604434709999519No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGT7160.15650888996725554No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGC7060.15432301161575757No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGA7000.15301148460485878No Hit
ACGCGGATCTTGACGGTTCGGCGGGTAGCCGTCGGAAGAGT6810.1488583157370126No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCT6750.14754678872611382No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGAC6650.14536091037461585No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCG6470.14142632934191945No Hit
TGGACCGGTAACCGGACGGCCACGACGGCCGTTATCGAACA6100.13333857944137692No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACG6010.13137128892502875No Hit
CAGCACACCGTCGCCCTCGAAAGCACCGCCATCATCTTCGT5490.12000472149723924No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGC5460.11934895799178985No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTG5430.11869319448634046No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG5370.11738166747544167No Hit
TTTCAGGATAGACGGGCTTGCAACCGGCGGAGCGTTGGATA4970.10863815406944972No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA4860.10623368788280196No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCT4710.10295487035555496No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGA4700.10273628252040518No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTA4630.10120616767435658No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)