FastQCFastQC Report
Wed 31 May 2023
EGAF00007923607

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923607
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences452640
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC22790.5034906327324143No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC21440.4736656062212796No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT20200.4462707670554966No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA15230.3364704842700601No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG11160.24655355249204666No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT9480.20943796394485684No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7820.17276422764227642No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGAC6810.1504506892895016No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG6540.14448568398727465No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGT6390.14117179215270415No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5990.13233474726051608No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT5680.12548603746907033No Hit
GGTTGCCAGCGGACCAATGATAGTCGGCGGGGTTTTCGGAC5610.12393955461293743No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA5370.1186373276776246No Hit
TTACGCGTTGACAATACCGTAGGTCGTCAGCGAGATGTTTC5260.11620714033227289No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA5140.11355602686461647No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGA5060.11178861788617887No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT4870.10759102156238953No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTG4770.10538176033934252No Hit
GGTATCGGAAGAGTCGTCATCCTCTTCTTCGGAGTCTTCTA4680.1033934252386002No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT4650.10273064687168611No Hit
ACCAATGATGGTCGGCGGGGTTTTCGGACGAGAGGTTTCCG4530.1000795334040297No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)