FastQCFastQC Report
Sun 21 May 2023
EGAF00007923608

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923608
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences452640
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT47471.048736302580417No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC27910.6166048073524213No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT26510.5856751502297631No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22460.49620007069635913No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG11870.26223930717568045No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG9440.20855425945563805No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT8780.19397313538352776No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACCAC7660.1692294096854012No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7510.1659155178508307No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA6730.14868328031106398No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC6590.14559031459879815No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT6450.14249734888653234No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG6370.14072993990809474No Hit
CTGCCGCAGTCTCCAGGCCCAGCGTTCCCGCTG6120.1352067868504772No Hit
CGTATGCCGACTACTAGCACCGCTTCCCAGAAC5970.1318928950159067No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGGGC5590.12349770236832804No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC5390.119079179922234No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGGAA5330.1177536231884058No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCACC5260.11620714033227289No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT5020.11090491339696006No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATCAC4830.10670731707317074No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT4770.10538176033934252No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTAAA4690.10361435136090491No Hit

[OK]Adapter Content

Adapter graph