FastQCFastQC Report
Sun 21 May 2023
EGAF00007923609

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923609
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468989
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC23410.4991588288851124No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC23220.49510756115815086No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT20880.4452130007313604No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA16380.3492619229875328No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG11580.2469141067274499No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT10380.22132715266242917No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7620.16247715831288154No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGAC7560.16119781060963048No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGT7140.15224237668687327No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG6460.13774310271669485No Hit
TTACGCGTTGACAATACCGTAGGTCGTCAGCGAGATGTTTC5890.12558929953581002No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5890.12558929953581002No Hit
GGTTGCCAGCGGACCAATGATAGTCGGCGGGGTTTTCGGAC5610.11961901025397184No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT5580.11897933640234633No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA5410.11535451790980172No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA5400.11514129329259322No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGA5390.1149280686753847No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTG5290.11279582250329964No Hit
GGTATCGGAAGAGTCGTCATCCTCTTCTTCGGAGTCTTCTA5040.10746520707308702No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT5000.10661230860425298No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT4840.10320071472891688No Hit
ACCAATGATGGTCGGCGGGGTTTTCGGACGAGAGGTTTCCG4770.10170814240845734No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT4750.10128169317404033No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)