FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007923610

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923610
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468989
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT51241.0925629385763846No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC29750.6343432361953052No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT28450.6066240359581994No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG12620.26908946691713453No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG10380.22132715266242917No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT8740.1863583154402342No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACCAC8740.1863583154402342No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7440.15863911520312843No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA6850.14605886278782657No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT6650.14179437044365648No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC6620.14115469659203095No Hit
CGTATGCCGACTACTAGCACCGCTTCCCAGAAC6300.13433150884135875No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGGGC6300.13433150884135875No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG6280.13390505960694174No Hit
CTGCCGCAGTCTCCAGGCCCAGCGTTCCCGCTG5990.12772154570789507No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC5840.12452317644976749No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGGAA5780.12324382874651645No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCACC5550.1183396625507208No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT5250.11194292403446562No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5130.10938422862796354No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATCAC5110.10895777939354656No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC5020.10703875783866999No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT4890.10426683781495942No Hit
CACACCCCTCCGATGCCGTCTATCGGTCTGGAA4810.10256104087729137No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTAAA4790.10213459164287436No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)