FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007923612

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923612
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences529484
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT12290.23211277394595492No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT9060.17110998632631014No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6380.12049467028276586No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC6350.11992808092406947No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC5300.10009745336969579No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)