FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007923627

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923627
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences501480
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG11560.23051766770359736No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG10450.20838318577012044No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8730.17408470926058864No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8220.1639148121560182No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7490.14935790061418203No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG7000.13958682300390843No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6540.13041397463508017No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA5340.1064848049772673No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)