FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007923629

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923629
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471385
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG11470.24332551947983072No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9710.2059887353225071No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8570.181804681947877No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7690.1631362898692152No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7260.15401423464895997No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6570.13937651813273652No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6520.138315814037358No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA4890.1037368605280185No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)